jloh stats
Description
Calculate heterozygous and homozygous SNP density distributions from a VCF file
Usage
jloh stats --vcf <VCF>
Parameters
Input / Output
- --vcf <PATH>
Input VCF file to produce statistics on.
Other options
- --threads <INT>
Number of parallel operations.
- --window-size <INT>
Distribution of SNP density will be calculated on genomic sliding windows of this size.
- --step-size <INT>
Sliding windows used in distribution will increase by this step size.