jloh stats

Description

Calculate heterozygous and homozygous SNP density distributions from a VCF file

Usage

jloh stats --vcf <VCF>

Parameters

Input / Output

--vcf <PATH>

Input VCF file to produce statistics on.

Other options

--threads <INT>

Number of parallel operations.

--window-size <INT>

Distribution of SNP density will be calculated on genomic sliding windows of this size.

--step-size <INT>

Sliding windows used in distribution will increase by this step size.