jloh cluster
Description
Cluster multiple jloh extract runs by overlap of their LOH blocks.
Usage
jloh cluster [options] --loh <LOH_A.tsv> ... <LOH_N.tsv>
Parameters
- --loh <PATH_1> ... <PATH_n>
Space-separated list of *.LOH_blocks.tsv files produced by jloh extract.
- --out-prefix <PATH|STR>
Pre-pend this prefix to each output file (path allowed).
- --max-dist <FLOAT>
Maximum distance [0.0 - 1.0] between elements in a cluster.
- --threads <INT>
Number of parallel operations performed.