jloh cluster

Description

Cluster multiple jloh extract runs by overlap of their LOH blocks.

Usage

jloh cluster [options] --loh <LOH_A.tsv> ... <LOH_N.tsv>

Parameters

--loh <PATH_1> ... <PATH_n>

Space-separated list of *.LOH_blocks.tsv files produced by jloh extract.

--out-prefix <PATH|STR>

Pre-pend this prefix to each output file (path allowed).

--max-dist <FLOAT>

Maximum distance [0.0 - 1.0] between elements in a cluster.

--threads <INT>

Number of parallel operations performed.