Welcome to the JLOH documentation
What is JLOH?
JLOH (/jay’lo/) is a tool to extract, filter, and analyse loss of heterozygosity (LOH) blocks based on single-nucleotide polymorphisms (VCF), read mapping information (BAM), and a reference genome sequence (FASTA).
A publication is currently being reviewed. The preprint can be found in bioRxiv (Schiavinato et al., 2023).